t-eoFitnessAssembledEA.cpp

// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-

//-----------------------------------------------------------------------------
// t-eoFitnessAssembledEA.cpp
// Marc Wintermantel & Oliver Koenig
// IMES-ST@ETHZ.CH
// March 2003

/*
    This library is free software; you can redistribute it and/or
    modify it under the terms of the GNU Lesser General Public
    License as published by the Free Software Foundation; either
    version 2 of the License, or (at your option) any later version.

    This library is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
    Lesser General Public License for more details.

    You should have received a copy of the GNU Lesser General Public
    License along with this library; if not, write to the Free Software
    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

    Contact: todos@geneura.ugr.es, http://geneura.ugr.es
             Marc.Schoenauer@inria.fr
             mak@dhi.dk
*/
//-----------------------------------------------------------------------------
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif

#include <iostream>
#include <cmath>

// General eo includes
#include <eo>
#include <utils/eoRealVectorBounds.h>   // The real bounds (not yet in general eo include)

// Representation dependent includes and typedefs
#include <es/eoReal.h>                  // Definition of representation
#include <es/eoRealInitBounded.h>       // Uniformly initializes real vector in bounds
#include <es/make_genotype_real.h>              // Initialization of a genotype
#include <eoEvalFunc.h>                 // Base class for fitness evaluation
#include <es/make_op_real.h>            // Variation operators using standard Real operators
#include <eoScalarFitnessAssembled.h>     // The fitness class
typedef eoReal<eoAssembledMinimizingFitness> Indi;

// Representation independent modules
#include <do/make_pop.h>                // Initialization of population
#include <do/make_continue.h>           // The stopping criterion
#include <do/make_checkpoint_assembled.h>       // Outputs (stats, population dumps, ...)
#include <do/make_algo_scalar.h>        // Evolution engine (selection and replacement)
#include <do/make_run.h>                // simple call to the algo.stays there for consistency reasons

// Define a fitness class
template <class EOT>
class eoAssembledEvalFunc : public eoEvalFunc<EOT>{
public:
  // Constructor defining number and descriptions of fitness terms
  eoAssembledEvalFunc() {

    // Define a temporary fitness object to have access to its static traits
    typename EOT::Fitness tmpfit(3, 0.0);
    tmpfit.setDescription(0,"Fitness");
    tmpfit.setDescription(1,"Some Value");
    tmpfit.setDescription(2,"Other Value");

  }

  void operator()(EOT& _eo){

    // Define temporary fitness object
    // (automatically gets initialized with size given in constructor)
    typename EOT::Fitness tmpfit;

    // Eval some dummy fitness
    double sum1=0.0, sum2=0.0;
    for (unsigned i=0; i < _eo.size(); ++i){
      sum1 += _eo[i]*_eo[i];
      sum2 += fabs(_eo[i]) + fabs(_eo[i]);
    }

    // Store some fitness terms
    tmpfit[1]= sum1;
    tmpfit[2]= sum2;

    // Store the fitness
    tmpfit = (sum1 + sum2)/_eo.size();

    // Pass it
    _eo.fitness( tmpfit );

  }
};

// checks for help demand, and writes the status file and make_help; in libutils
void make_help(eoParser & _parser);

// now use all of the above, + representation dependent things
int main(int argc, char* argv[]){

  std::cout << "-----------------------------------" << std::endl;
  std::cout << "START t-eoFitnessAssembledEA" << std::endl;

  try{

    // Parser & State
    eoParser parser(argc, argv);  // for user-parameter reading
    eoState state;    // keeps all things allocated

    // A) Representation dependent stuff

    // The fitness
    eoAssembledEvalFunc<Indi> plainEval;
    // turn that object into an evaluation counter
    eoEvalFuncCounter<Indi> eval(plainEval);

    // The genotype
    eoRealInitBounded<Indi>& init = do_make_genotype(parser, state, Indi() );

    // The variation operators
    eoGenOp<Indi>& op = do_make_op(parser, state, init);

    // B) Create representation independent stuff

    // initialize the population
    // yes, this is representation indepedent once you have an eoInit
    eoPop<Indi>& pop   = do_make_pop(parser, state, init);

    // stopping criteria
    eoContinue<Indi> & term = do_make_continue(parser, state, eval);
    // output
    eoCheckPoint<Indi> & checkpoint = do_make_checkpoint_assembled(parser, state, eval, term);
    // algorithm (need the operator!)
    eoAlgo<Indi>& ga = do_make_algo_scalar(parser, state, eval, checkpoint, op);


    make_help(parser);  // To be called after all parameters have been read !

    // C) Run the algorithm

    // evaluate intial population AFTER help and status in case it takes time
    apply<Indi>(eval, pop);
    // if you want to print it out
    std::cout << "Initial Population\n";
    pop.sortedPrintOn(std::cout);
    std::cout << std::endl;

    do_run(ga, pop); // run the ga

    std::cout << "Final Population\n";
    pop.sortedPrintOn(std::cout);
    std::cout << std::endl;

  }
  catch(std::exception& e)
    {
      std::cout << e.what() << std::endl;
      return 1;
    }

  std::cout << "-----------------------------------" << std::endl;
  std::cout << "END t-eoFitnessAssembledEA" << std::endl;

  return 0;

}